Difference between revisions of "Fin"

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* '''Description:''' suppressor of ''[[recU]]'' and ''[[recB]]'' mutations, participates in the stabilization and or processing of holliday junction intermediates <br/><br/>
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* '''Description:'''  
 
+
** suppressor of ''[[recU]]'' mutations, participates in the stabilization and or processing of holliday junction intermediates {{PubMed|11810266}}<br/><br/>
 +
** alternative description: antagonist to [[SigF]], required for the switch from [[SigF]]- to [[SigG]]-dependent gene expression in the forespore {{PubMed|21037003}}<br/><br/>
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
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* '''Interactions:'''
 
* '''Interactions:'''
  
* '''Localization:'''
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* '''Localization:''' localizes diffusely within the forespore compartment of sporangia at both early and late stages of sporulation, cytosolic protein {{PubMed|21037003}}
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Operon:'''  
 
* '''Operon:'''  
  
* '''[[Sigma factor]]:'''  
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* '''[[Sigma factor]]:''' [[SigF]] {{PubMed|21037003}}, [[SigG]] {{PubMed|21037003}}
  
* '''Regulation:''' expressed in two waves in the f
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* '''Regulation:''' expressed in two waves in the forespore (after two hours ([[SigF]]) and three hours ([[SigG]]) after the onset of sporulation) {{PubMed|21037003}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
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=References=
 
=References=
<pubmed> 15317759 11810266 </pubmed>
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<pubmed> 15317759 11810266 21037003</pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:58, 3 November 2010

  • Description:
    • suppressor of recU mutations, participates in the stabilization and or processing of holliday junction intermediates PubMed

    • alternative description: antagonist to SigF, required for the switch from SigF- to SigG-dependent gene expression in the forespore PubMed

Gene name subA
Synonyms yabK
Essential no
Product unknown
Function homologous recombination
MW, pI 8 kDa, 5.192
Gene length, protein length 228 bp, 76 aa
Immediate neighbours spoVC, mfd
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YabK context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU00540

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: localizes diffusely within the forespore compartment of sporangia at both early and late stages of sporulation, cytosolic protein PubMed

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation: expressed in two waves in the forespore (after two hours (SigF) and three hours (SigG) after the onset of sporulation) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References