Difference between revisions of "YvyD"
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| − | * '''Description:''' general stress protein, required for ribosome dimerization in the stationary phase<br/><br/> | + | * '''Description:''' general stress protein, required for ribosome dimerization in the stationary phase, required for protection against paraquat stress <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 12: | Line 12: | ||
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown | |style="background:#ABCDEF;" align="center"| '''Product''' || unknown | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || dimerization of ribosomes in the stationary phase | + | |style="background:#ABCDEF;" align="center"|'''Function''' || dimerization of ribosomes in the stationary phase, protection against paraquat stress |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35310 yvyD] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35310 yvyD] | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}, | {{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}, | ||
| + | {{SubtiWiki category|[[resistance against oxidative and electrophile stress]]}}, | ||
{{SubtiWiki category|[[membrane proteins]]}}, | {{SubtiWiki category|[[membrane proteins]]}}, | ||
{{SubtiWiki category|[[phosphoproteins]]}} | {{SubtiWiki category|[[phosphoproteins]]}} | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvyD_3631003_3631572_-1 yvyD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvyD_3631003_3631572_-1 yvyD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigB]] {{PubMed|9852014,15805528}}, [[SigH]] {{PubMed|9852014}} | + | * '''[[Sigma factor]]:''' [[SigB]] {{PubMed|9852014,15805528}}, [[SigH]] {{PubMed|9852014}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 140: | Line 141: | ||
=References= | =References= | ||
| − | + | <pubmed>11948165,9852014,10913081,22517742,12107147 15805528 22950019 22582280</pubmed> | |
| − | <pubmed>11948165,9852014,10913081,22517742,12107147 15805528 </pubmed> | ||
==Publications on the homologous ''E. coli'' proteins Hpf and YfiA== | ==Publications on the homologous ''E. coli'' proteins Hpf and YfiA== | ||
<pubmed> 22605777 </pubmed> | <pubmed> 22605777 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 19:32, 15 September 2013
- Description: general stress protein, required for ribosome dimerization in the stationary phase, required for protection against paraquat stress
| Gene name | yvyD |
| Synonyms | yviI |
| Essential | no |
| Product | unknown |
| Function | dimerization of ribosomes in the stationary phase, protection against paraquat stress |
| Gene expression levels in SubtiExpress: yvyD | |
| MW, pI | 21 kDa, 5.184 |
| Gene length, protein length | 567 bp, 189 aa |
| Immediate neighbours | secA, smiA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), resistance against oxidative and electrophile stress, membrane proteins, phosphoproteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU35310
Phenotypes of a mutant
- the mutant is cold-sensitive
- delayed recovery from stationary phase and delayed germination
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ribosomal protein S30Ae family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- phosphorylated on Arg-6 PubMed
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
- membrane protein
Database entries
- Structure:
- UniProt: P28368
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: yvyD PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Publications on the homologous E. coli proteins Hpf and YfiA
