Difference between revisions of "FadG"

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|style="background:#ABCDEF;" align="center"|'''Function''' || fatty acid degradation
 
|style="background:#ABCDEF;" align="center"|'''Function''' || fatty acid degradation
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_deg.html Fatty acid degradation]'''
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14071 fadG]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=fadG fadG]'''
 
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|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 64 kDa, 8.556   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 64 kDa, 8.556   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fadH]]'', ''[[ykzU]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fadH]]'', ''[[ykzU]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAX52614&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14071 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14071 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14071 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ykuG_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ykuG_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=fadG_1479137_1480867_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:fadG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14071]]
 
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|}
 
|}
  
 
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* '''Locus tag:''' BSU14071
 
* '''Locus tag:''' BSU14071
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[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=fadG_1479137_1480867_1 Expression]
 
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU14071&redirect=T BSU14071]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ykuFG.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ykuFG.html]
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=== Database entries ===
 
=== Database entries ===
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* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU14071&redirect=T BSU14071]
  
 
* '''Structure:'''
 
* '''Structure:'''
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* '''Operon:''' ''[[fadH]]-[[fadG]]'' {{PubMed|17189250}}  
 
* '''Operon:''' ''[[fadH]]-[[fadG]]'' {{PubMed|17189250}}  
  
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* '''[[Sigma factor]]:'''  
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=fadG_1479137_1480867_1 fadG] {{PubMed|22383849}}
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* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Latest revision as of 13:34, 2 April 2014

  • Description: fatty acid degradation

Gene name fadG
Synonyms ykuG
Essential no
Product unknown
Function fatty acid degradation
Gene expression levels in SubtiExpress: fadG
Metabolic function and regulation of this protein in SubtiPathways:
fadG
MW, pI 64 kDa, 8.556
Gene length, protein length 1728 bp, 576 aa
Immediate neighbours fadH, ykzU
Sequences Protein DNA DNA_with_flanks
Genetic context
YkuG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
FadG expression.png






























Categories containing this gene/protein

utilization of lipids

This gene is a member of the following regulons

FadR regulon

The gene

Basic information

  • Locus tag: BSU14071

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: fadG family (according to Swiss-Prot)
  • Paralogous protein(s): YbfG

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • induced in the presence of long-chain fatty acids (FadR) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

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