Difference between revisions of "Stringent response"
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{{RegulonTable| | {{RegulonTable| | ||
Regulator=[[stringent response]] | Regulator=[[stringent response]] | ||
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=== Negative regulation === | === Negative regulation === | ||
* ''[[adk]]'' | * ''[[adk]]'' | ||
| − | * ''[[ | + | * ''[[atpI]]-[[atpB]]-[[atpE]]-[[atpF]]-[[atpH]]-[[atpA]]-[[atpG]]-[[atpD]]-[[atpC]]'' |
| − | + | * ''[[cymR]]-[[yrvO]]-[[trmU]]'' | |
| − | + | * ''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]'' | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | * ''[[cymR]]'' | ||
| − | * ''[[dltA]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[dxs]]'' | * ''[[dxs]]'' | ||
* ''[[frr]]'' | * ''[[frr]]'' | ||
* ''[[fusA]]'' | * ''[[fusA]]'' | ||
| − | * ''[[gcaD]]'' | + | * ''[[gcaD]]-[[prs]]'' |
* ''[[infA]]'' | * ''[[infA]]'' | ||
| − | * ''[[ | + | * ''[[infC]]-[[rpmI]]-[[rplT]]'' |
| − | |||
* ''[[map]]'' | * ''[[map]]'' | ||
* ''[[mbl]]'' | * ''[[mbl]]'' | ||
* ''[[murE]]'' | * ''[[murE]]'' | ||
| − | |||
| − | |||
* ''[[nusB]]'' | * ''[[nusB]]'' | ||
| − | * ''[[pdhA]] | + | * ''[[pdhA]]-[[pdhB]]-[[pdhC]]-[[pdhD]]'' |
| − | |||
| − | |||
| − | |||
* ''[[pnpA]]'' | * ''[[pnpA]]'' | ||
| − | + | * ''[[ptsG]]-[[ptsH]]-[[ptsI]]'' | |
| − | * ''[[ptsG]] | ||
| − | |||
| − | |||
* ''[[pyrH]]'' | * ''[[pyrH]]'' | ||
| − | * ''[[qoxA]] | + | * ''[[qoxA]]-[[qoxB]]-[[qoxC]]-[[qoxD]]'' |
| − | + | * ''[[recJ]]'' | |
| − | |||
| − | |||
| − | * ''[[ | ||
* ''[[rnc]]'' | * ''[[rnc]]'' | ||
* ''[[rplA]]'' | * ''[[rplA]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[rplJ]]'' | * ''[[rplJ]]'' | ||
* ''[[rplK]]'' | * ''[[rplK]]'' | ||
* ''[[rplL]]'' | * ''[[rplL]]'' | ||
* ''[[rplM]]'' | * ''[[rplM]]'' | ||
| − | |||
| − | |||
| − | |||
* ''[[rplQ]]'' | * ''[[rplQ]]'' | ||
| − | |||
* ''[[rplS]]'' | * ''[[rplS]]'' | ||
| − | |||
* ''[[rplU]]'' | * ''[[rplU]]'' | ||
| − | |||
| − | |||
| − | |||
* ''[[rpmB]]'' | * ''[[rpmB]]'' | ||
| − | |||
| − | |||
* ''[[rpmE]]'' | * ''[[rpmE]]'' | ||
* ''[[rpmF]]'' | * ''[[rpmF]]'' | ||
| − | |||
* ''[[rpmJ]]'' | * ''[[rpmJ]]'' | ||
* ''[[rpoA]]'' | * ''[[rpoA]]'' | ||
| Line 84: | Line 43: | ||
* ''[[rpoC]]'' | * ''[[rpoC]]'' | ||
* ''[[rpsB]]'' | * ''[[rpsB]]'' | ||
| − | |||
* ''[[rpsD]]'' | * ''[[rpsD]]'' | ||
| − | * ''[[ | + | * ''[[rpsF]]-[[ssbA]]-[[rpsR]]'' |
| − | |||
* ''[[rpsG]]'' | * ''[[rpsG]]'' | ||
| − | |||
* ''[[rpsI]]'' | * ''[[rpsI]]'' | ||
| − | * ''[[rpsJ]]'' | + | * ''[[rpsJ]]-[[rplC]]-[[rplD]]-[[rplW]]-[[rplB]]-[[rpsS]]-[[rplV]]-[[rpsC]]-[[rplP]]-[[rpmC]]-[[rpsQ]]-[[rplN]]-[[rplX]]-[[rplE]]-[[rpsN]]-[[rpsH]]-[[rplF]]-[[rplR]]-[[rpsE]]-[[rpmD]]-[[rplO]]'' |
* ''[[rpsK]]'' | * ''[[rpsK]]'' | ||
* ''[[rpsL]]'' | * ''[[rpsL]]'' | ||
* ''[[rpsM]]'' | * ''[[rpsM]]'' | ||
| − | |||
* ''[[rpsO]]'' | * ''[[rpsO]]'' | ||
* ''[[rpsP]]'' | * ''[[rpsP]]'' | ||
| − | + | * ''[[scpA]]-[[scpB]]'' | |
| − | |||
| − | |||
| − | * ''[[scpA]] | ||
| − | |||
* ''[[secY]]'' | * ''[[secY]]'' | ||
| − | |||
* ''[[tig]]'' | * ''[[tig]]'' | ||
| − | |||
* ''[[truA]]'' | * ''[[truA]]'' | ||
* ''[[tsf]]'' | * ''[[tsf]]'' | ||
| Line 112: | Line 61: | ||
* ''[[ybxB]]'' | * ''[[ybxB]]'' | ||
* ''[[ybxF]]'' | * ''[[ybxF]]'' | ||
| − | * ''[[yjlC]]'' | + | * ''[[yjlC]]-[[ndh]]'' |
* ''[[ylaG]]'' | * ''[[ylaG]]'' | ||
* ''[[ylbN]]'' | * ''[[ylbN]]'' | ||
| − | * ''[[ | + | * ''[[ylxS]]-[[nusA]]-[[ylxR]]-[[ylxQ]]-[[infB]]-[[ylxP]]-[[rbfA]]'' |
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[ysxB]]'' | * ''[[ysxB]]'' | ||
* ''[[yugI]]'' | * ''[[yugI]]'' | ||
| Line 127: | Line 72: | ||
* ''[[alsS]]-[[alsD]]'' | * ''[[alsS]]-[[alsD]]'' | ||
* ''[[pycA]]'' | * ''[[pycA]]'' | ||
| + | |||
| + | =Key original publications= | ||
| + | <pubmed>20081037 18433449 11948165 9383190 </pubmed> | ||
| + | |||
| + | =Important reviews= | ||
| + | <pubmed>18452582 17982469 24462007 </pubmed> | ||
| + | |||
| + | =Back to [[regulons]]= | ||
Latest revision as of 08:52, 7 July 2015
| Regulator | |
Contents
Genes in this regulon
Negative regulation
- adk
- atpI-atpB-atpE-atpF-atpH-atpA-atpG-atpD-atpC
- cymR-yrvO-trmU
- dltA-dltB-dltC-dltD-dltE
- dxs
- frr
- fusA
- gcaD-prs
- infA
- infC-rpmI-rplT
- map
- mbl
- murE
- nusB
- pdhA-pdhB-pdhC-pdhD
- pnpA
- ptsG-ptsH-ptsI
- pyrH
- qoxA-qoxB-qoxC-qoxD
- recJ
- rnc
- rplA
- rplJ
- rplK
- rplL
- rplM
- rplQ
- rplS
- rplU
- rpmB
- rpmE
- rpmF
- rpmJ
- rpoA
- rpoB
- rpoC
- rpsB
- rpsD
- rpsF-ssbA-rpsR
- rpsG
- rpsI
- rpsJ-rplC-rplD-rplW-rplB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ-rplN-rplX-rplE-rpsN-rpsH-rplF-rplR-rpsE-rpmD-rplO
- rpsK
- rpsL
- rpsM
- rpsO
- rpsP
- scpA-scpB
- secY
- tig
- truA
- tsf
- tufA
- ybxB
- ybxF
- yjlC-ndh
- ylaG
- ylbN
- ylxS-nusA-ylxR-ylxQ-infB-ylxP-rbfA
Positive regulation
Key original publications
Shigeo Tojo, Kanako Kumamoto, Kazutake Hirooka, Yasutaro Fujita
Heavy involvement of stringent transcription control depending on the adenine or guanine species of the transcription initiation site in glucose and pyruvate metabolism in Bacillus subtilis.
J Bacteriol: 2010, 192(6);1573-85
[PubMed:20081037]
[WorldCat.org]
[DOI]
(I p)
Libor Krásný, Hana Tiserová, Jirí Jonák, Dominik Rejman, Hana Sanderová
The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis.
Mol Microbiol: 2008, 69(1);42-54
[PubMed:18433449]
[WorldCat.org]
[DOI]
(I p)
Christine Eymann, Georg Homuth, Christian Scharf, Michael Hecker
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
J Bacteriol: 2002, 184(9);2500-20
[PubMed:11948165]
[WorldCat.org]
[DOI]
(P p)
T M Wendrich, M A Marahiel
Cloning and characterization of a relA/spoT homologue from Bacillus subtilis.
Mol Microbiol: 1997, 26(1);65-79
[PubMed:9383190]
[WorldCat.org]
[DOI]
(P p)
Important reviews
