Difference between revisions of "CodY regulon"

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(→‎Repression)
(→‎Repression)
 
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Line 12: Line 12:
 
* ''[[metP]]''
 
* ''[[metP]]''
 
* ''[[metQ]]''
 
* ''[[metQ]]''
 +
* ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]''
  
 
=== Repression ===
 
=== Repression ===
 
* ''[[acsA]]''
 
* ''[[acsA]]''
 +
* ''[[amhX]]''
 
* ''[[ansZ]]''
 
* ''[[ansZ]]''
 
* ''[[appA/1]]''
 
* ''[[appA/1]]''
Line 22: Line 24:
 
* ''[[appD]]''
 
* ''[[appD]]''
 
* ''[[appF]]''
 
* ''[[appF]]''
 +
* ''[[aprE]]''
 +
* ''[[argC]]-[[argJ]]-[[argB]]-[[argD]]-[[carA]]-[[carB]]-[[argF]]''
 
* ''[[asnH]]''
 
* ''[[asnH]]''
 
* ''[[bacA]]''
 
* ''[[bacA]]''
Line 29: Line 33:
 
* ''[[bacE]]''
 
* ''[[bacE]]''
 
* ''[[bacF]]''
 
* ''[[bacF]]''
 +
* ''[[bacG]]''
 
* ''[[bcaP]]''
 
* ''[[bcaP]]''
−
* ''[[bcd]]''
 
−
* ''[[bkdAA]]''
 
−
* ''[[bkdAB]]''
 
−
* ''[[bkdB]]''
 
 
* ''[[bkdR]]''
 
* ''[[bkdR]]''
−
* ''[[buk]]''
+
* ''[[braB]]''
−
* ''[[cheA]]''
 
−
* ''[[cheB]]''
 
−
* ''[[cheC]]''
 
−
* ''[[cheD]]''
 
−
* ''[[cheW]]''
 
−
* ''[[cheY]]''
 
 
* ''[[citB]]''
 
* ''[[citB]]''
 
* ''[[clpQ]]''
 
* ''[[clpQ]]''
Line 48: Line 43:
 
* ''[[codY]]''
 
* ''[[codY]]''
 
* ''[[comK]]''
 
* ''[[comK]]''
−
* ''[[comS]]''
 
 
* ''[[dppA]]''
 
* ''[[dppA]]''
 
* ''[[dppB]]''
 
* ''[[dppB]]''
Line 54: Line 48:
 
* ''[[dppD]]''
 
* ''[[dppD]]''
 
* ''[[dppE]]''
 
* ''[[dppE]]''
−
* ''[[flgB]]''
+
* ''[[flgB]]-[[flgC]]-[[fliE]]-[[fliF]]-[[fliG]]-[[fliH]]-[[fliI]]-[[fliJ]]-[[ylxF]]-[[fliK]]-[[flgD]]-[[flgE]]-[[fliL]]-[[fliM]]-[[fliY]]-[[cheY]]-[[fliZ]]-[[fliP]]-[[fliQ]]-[[fliR]]-[[flhB]]-[[flhA]]-[[flhF]]-[[flhG]]-[[cheB]]-[[cheA]]-[[cheW]]-[[cheC]]-[[cheD]]-[[sigD]]-[[swrB]]''
−
* ''[[flgC]]''
 
−
* ''[[flgD]]''
 
−
* ''[[flgE]]''
 
−
* ''[[flhA]]''
 
−
* ''[[flhB]]''
 
−
* ''[[flhF]]''
 
−
* ''[[fliE]]''
 
−
* ''[[fliF]]''
 
−
* ''[[fliG]]''
 
−
* ''[[fliH]]''
 
−
* ''[[fliI]]''
 
−
* ''[[fliJ]]''
 
−
* ''[[fliK]]''
 
−
* ''[[fliL]]''
 
−
* ''[[fliM]]''
 
−
* ''[[fliP]]''
 
−
* ''[[fliQ]]''
 
−
* ''[[fliR]]''
 
−
* ''[[fliY]]''
 
−
* ''[[fliZ]]''
 
 
* ''[[frlB]]-[[frlO]]-[[frlN]]-[[frlM]]-[[frlD]]''
 
* ''[[frlB]]-[[frlO]]-[[frlN]]-[[frlM]]-[[frlD]]''
 
* ''[[gabP]]''
 
* ''[[gabP]]''
 
* ''[[hag]]''
 
* ''[[hag]]''
−
* ''[[hutG]]''
+
* ''[[hom]]-[[thrC]]-[[thrB]]''
−
* ''[[hutH]]''
+
* ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]''
−
* ''[[hutI]]''
+
* ''[[ilvA]]-[[ypmP]]''
−
* ''[[hutM]]''
+
* ''[[ilvB]]-[[ilvH]]-[[ilvC]]-[[leuA]]-[[leuB]]-[[leuC]]-[[leuD]]''
−
* ''[[hutP]]''
 
−
* ''[[hutU]]''
 
−
* ''[[ilvA]]''
 
−
* ''[[ilvB]]''
 
−
* ''[[ilvC]]''
 
 
* ''[[ilvD]]''
 
* ''[[ilvD]]''
−
* ''[[ilvH]]''
+
* ''[[ispA]]''
 
* ''[[kapB]]''
 
* ''[[kapB]]''
 
* ''[[kinB]]''
 
* ''[[kinB]]''
−
* ''[[leuA]]''
+
* ''[[mpr]]''
−
* ''[[leuB]]''
+
* ''[[nprE]]''
−
* ''[[leuC]]''
 
−
* ''[[leuD]]''
 
−
* ''[[lpdV]]''
 
 
* ''[[nupN]]-[[nupO]]-[[nupP]]-[[nupQ]]''
 
* ''[[nupN]]-[[nupO]]-[[nupP]]-[[nupQ]]''
 +
* ''[[oppA]]-[[oppB]]-[[oppC]]-[[oppD]]-[[oppF]]''
 
* ''[[phrA]]''
 
* ''[[phrA]]''
 
* ''[[phrC]]''
 
* ''[[phrC]]''
 
* ''[[phrE]]''
 
* ''[[phrE]]''
−
* ''[[ptb]]''
+
* ''[[ptb]]-[[bcd]]-[[buk]]-[[lpdV]]-[[bkdAA]]-[[bkdAB]]-[[bkdB]]''
 
* ''[[putB]]-[[putC]]''
 
* ''[[putB]]-[[putC]]''
 
* ''[[rapA]]''
 
* ''[[rapA]]''
 
* ''[[rapC]]''
 
* ''[[rapC]]''
 
* ''[[rapE]]''
 
* ''[[rapE]]''
−
* ''[[rocA]]''
+
* ''[[rocA]]-[[rocB]]-[[rocC]]''
−
* ''[[rocB]]''
+
* ''[[rocD]]-[[rocE]]-[[rocF]]''
−
* ''[[rocC]]''
+
* ''[[scoC]]''
−
* ''[[rocD]]''
+
* ''[[srfAA]]-[[srfAB]]-[[comS]]-[[srfAC]]-[[srfAD]]''
−
* ''[[rocE]]''
+
* ''[[thrD]]''
−
* ''[[rocF]]''
+
* ''[[ureA]]-[[ureB]]-[[ureC]]''
−
* ''[[sigD]]''
+
* ''[[vpr]]''
−
* ''[[srfAA]]''
 
−
* ''[[srfAB]]''
 
−
* ''[[srfAC]]''
 
−
* ''[[srfAD]]''
 
−
* ''[[swrB]]''
 
−
* ''[[ureA]]''
 
−
* ''[[ureB]]''
 
−
* ''[[ureC]]''
 
 
* ''[[ybgE]]''
 
* ''[[ybgE]]''
 
* ''[[ycgA]]''
 
* ''[[ycgA]]''
 +
 
* ''[[yhjC]]''
 
* ''[[yhjC]]''
 
* ''[[ykfA]]''
 
* ''[[ykfA]]''
Line 128: Line 88:
 
* ''[[ykfD]]''
 
* ''[[ykfD]]''
 
* ''[[ylmA]]''
 
* ''[[ylmA]]''
−
* ''[[ylxF]]''
+
* ''[[yoyD]]''
−
* ''[[ylxH]]''
 
−
* ''[[ypmP]]''
 
 
* ''[[yuiA]]''
 
* ''[[yuiA]]''
 
* ''[[yuiB]]''
 
* ''[[yuiB]]''
 
* ''[[yuiC]]''
 
* ''[[yuiC]]''
 
* ''[[yurJ]]''
 
* ''[[yurJ]]''
−
* ''[[ywfH]]''
+
* ''[[ywaA]]''
 
* ''[[yxaM]]''
 
* ''[[yxaM]]''
 
* ''[[yxbA]]''
 
* ''[[yxbA]]''
Line 144: Line 102:
  
 
= Important publications on the [[CodY]] regulon =
 
= Important publications on the [[CodY]] regulon =
−
<pubmed>18083814 17982469 15802253 12618455  </pubmed>
+
<pubmed>18083814 17982469 15802253 12618455  23569278 24462007 24843172 </pubmed>
  
 
=Back to [[regulons]]=
 
=Back to [[regulons]]=

Latest revision as of 17:43, 5 June 2016

Regulator

CodY

Genes in this regulon

Activation

Repression

Important publications on the CodY regulon

Shaun R Brinsmade, Elizabeth L Alexander, Jonathan Livny, Arion I Stettner, Daniel Segrè, Kyu Y Rhee, Abraham L Sonenshein
Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY.
Proc Natl Acad Sci U S A: 2014, 111(22);8227-32
[PubMed:24843172] [WorldCat.org] [DOI] (I p)

Tobias Geiger, Christiane Wolz
Intersection of the stringent response and the CodY regulon in low GC Gram-positive bacteria.
Int J Med Microbiol: 2014, 304(2);150-5
[PubMed:24462007] [WorldCat.org] [DOI] (I p)

Boris R Belitsky, Abraham L Sonenshein
Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution.
Proc Natl Acad Sci U S A: 2013, 110(17);7026-31
[PubMed:23569278] [WorldCat.org] [DOI] (I p)

Boris R Belitsky, Abraham L Sonenshein
Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis.
J Bacteriol: 2008, 190(4);1224-36
[PubMed:18083814] [WorldCat.org] [DOI] (I p)

Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469] [WorldCat.org] [DOI] (I p)

Abraham L Sonenshein
CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria.
Curr Opin Microbiol: 2005, 8(2);203-7
[PubMed:15802253] [WorldCat.org] [DOI] (P p)

Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455] [WorldCat.org] [DOI] (P p)


Back to regulons

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