Difference between revisions of "RapC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]] activity
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]] activity
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03770 rapC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03770 rapC]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapC RapC]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapC RapC]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yclK]]'', ''[[phrC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yclK]]'', ''[[phrC]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12185&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03770 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03770 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03770 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rapC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapC_context.gif]]

Revision as of 12:08, 13 May 2013

Gene name rapC
Synonyms yclL
Essential no
Product response regulator aspartate phosphatase
Function control of ComA activity
Gene expression levels in SubtiExpress: rapC
Interactions involving this protein in SubtInteract: RapC
MW, pI 45 kDa, 5.024
Gene length, protein length 1146 bp, 382 aa
Immediate neighbours yclK, phrC
Sequences Protein DNA Advanced_DNA
Genetic context
RapC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RapC expression.png
























Categories containing this gene/protein

genetic competence, protein modification, transcription factors and their control, quorum sensing

This gene is a member of the following regulons

CodY regulon, ComA regulon

The gene

Basic information

  • Locus tag: BSU03770

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: control of ComA activity PubMed
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: binding of PhrC to RapC prevents it from binding ComA PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
    • expressed at high cell density (ComA) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References