Difference between revisions of "SdhA"

From SubtiWiki
Jump to: navigation, search
Line 97: Line 97:
 
** [[SdhA]]-[[SdhB]] (as part of the [[SdhC]]-[[SdhB]]-[[SdhA]] complex)
 
** [[SdhA]]-[[SdhB]] (as part of the [[SdhC]]-[[SdhB]]-[[SdhA]] complex)
 
** [[FloT]]-[[SdhA]] {{PubMed|23651456}}
 
** [[FloT]]-[[SdhA]] {{PubMed|23651456}}
 +
** part of a [[Respiratory complexes and supercomplexes|respiratory supercomplex]] {{PubMed|23880299}}
  
* '''[[Localization]]:''' attached to the membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
+
* '''[[Localization]]:'''  
 +
** attached to the membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
  
 
=== Database entries ===
 
=== Database entries ===
Line 154: Line 156:
 
=References=
 
=References=
  
<pubmed>2987185,1707123,6401289,6406223,1324713,3036777,2495271,3027051,22389480,17726680 18763711 17726680 16493705 3910107 6799760 12560550  23651456</pubmed>
+
<pubmed>2987185,1707123,6401289,6406223,1324713,3036777,2495271,3027051,22389480,17726680 18763711 17726680 16493705 3910107 6799760 12560550  23651456 23880299</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 18:04, 11 August 2013

  • Description: succinate dehydrogenase (flavoprotein subunit)

Gene name sdhA
Synonyms citF
Essential no
Product succinate dehydrogenase (flavoprotein subunit)
Function TCA cycle
Gene expression levels in SubtiExpress: sdhA
Interactions involving this protein in SubtInteract: SdhA
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 65 kDa, 5.714
Gene length, protein length 1758 bp, 586 aa
Immediate neighbours sdhB, sdhC
Sequences Protein DNA DNA_with_flanks
Genetic context
SdhA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SdhA expression.png















Categories containing this gene/protein

carbon core metabolism, membrane proteins, phosphoproteins

This gene is a member of the following regulons

FsrA regulon

The gene

Basic information

  • Locus tag: BSU28440

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Succinate + acceptor = fumarate + reduced acceptor (according to Swiss-Prot)
  • Protein family: FRD/SDH subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Cofactor(s): Fe
  • Effectors of protein activity:
    • Inhibited by 2-(n-Heptyl)-4-hydroxy-quinoline N-oxide PubMed
    • Activated by Cytochrome b558 PubMed

Database entries

  • Structure: 1NEK (E. coli)
  • KEGG entry: [3]
  • E.C. number: 1.3.99.1

Additional information

  • This enzyme is a membrane-bound trimer PubMed PubMed
    • One subunit is bound to cytochrome b558, and this subunit is the one bound to the cytosolic side of the membrane PubMed PubMed
    • Another subunit is the flavoprotein one, required for FAD usage PubMed PubMed
    • The other subunit has an iron-sulphur domain necessary for the catalytic activity PubMed PubMed
  • extensive information on the structure and enzymatic properties of succinate dehydrogenase can be found at Proteopedia

Expression and regulation

  • Regulation:
    • constitutive
    • part of the iron sparing response (FsrA) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant: GP743 (sdhCA, cat), available in Stülke lab
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References