Difference between revisions of "OxdC"
| Line 35: | Line 35: | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
| − | |||
| − | |||
| − | |||
| − | |||
<br/><br/> | <br/><br/> | ||
| Line 112: | Line 108: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxdC_3410466_3411623_1 oxdC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxdC_3410466_3411623_1 oxdC] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[YvrI]]-[[YvrHa]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | + | * '''[[Sigma factor]]:''' [[YvrI]]-[[YvrHa]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] |
* '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | * '''Regulation:''' induced by acidic growth conditions [http://www.ncbi.nlm.nih.gov/sites/entrez/19047353 PubMed] | ||
| Line 143: | Line 139: | ||
<pubmed>20464388 </pubmed> | <pubmed>20464388 </pubmed> | ||
==Original publications== | ==Original publications== | ||
| − | + | <pubmed>12056897,18573182,17269748,14871895 ,10960116 , 19047353, 19473032 11546787 15583401 21264418 21782782 22404040 23734819 21277974 22517742</pubmed> | |
| − | <pubmed>12056897,18573182,17269748,14871895 ,10960116 , 19047353, 19473032 11546787 15583401 21264418 21782782 22404040 22517742</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 10:36, 6 June 2013
- Description: oxalate decarboxylase
| Gene name | oxdC |
| Synonyms | yvrK |
| Essential | no |
| Product | oxalate decarboxylase |
| Function | unknown |
| Gene expression levels in SubtiExpress: oxdC | |
| MW, pI | 43 kDa, 5.101 |
| Gene length, protein length | 1155 bp, 385 aa |
| Immediate neighbours | yvrJ, yvrL |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
acid stress proteins (controlled by YvrI-YvrHa), phosphoproteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33240
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Oxalate = formate + CO2 (according to Swiss-Prot)
- Protein family:
- Paralogous protein(s): OxdD
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- phosphorylated on Arg-12 PubMed
- Cofactor(s): requires Mn(II) for activity PubMed
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure: 1UW8
- UniProt: O34714
- KEGG entry: [2]
- E.C. number: 4.1.1.2
Additional information
Expression and regulation
- Regulation: induced by acidic growth conditions PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
John Helmann, Cornell University, USA Homepage
Your additional remarks
References
Reviews
Miia R Mäkelä, Kristiina Hildén, Taina K Lundell
Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi.
Appl Microbiol Biotechnol: 2010, 87(3);801-14
[PubMed:20464388]
[WorldCat.org]
[DOI]
(I p)
Original publications
