Difference between revisions of "GanA"

From SubtiWiki
Jump to: navigation, search
Line 55: Line 55:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU34130&redirect=T BSU34130]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yvfKLM-lacA-yvfO.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yvfKLM-lacA-yvfO.html]
Line 92: Line 93:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU34130&redirect=T BSU34130]
  
 
* '''Structure:'''
 
* '''Structure:'''

Revision as of 14:48, 2 April 2014

  • Description: beta-galactosidase

Gene name ganA
Synonyms yvfN, lacA
Essential no
Product beta-galactosidase
Function galactan utilization
Gene expression levels in SubtiExpress: ganA
MW, pI 79 kDa, 5.704
Gene length, protein length 2061 bp, 687 aa
Immediate neighbours ganB, ganQ
Sequences Protein DNA DNA_with_flanks
Genetic context
LacA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
LacA expression.png















Categories containing this gene/protein

utilization of specific carbon sources, phosphoproteins

This gene is a member of the following regulons

LacR regulon

The gene

Basic information

  • Locus tag: BSU34130

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • degradation of galactotriose to galactose PubMed
  • Protein family: glycosyl hydrolase 42 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
    • phosphorylated on Arg-387 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:GP1181 (aphA3) available in the Stülke lab
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References