Difference between revisions of "RapC"

From SubtiWiki
Jump to: navigation, search
Line 30: Line 30:
  
 
<br/><br/>
 
<br/><br/>
 +
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[genetic competence]]}},
 +
{{SubtiWiki category|[[protein modification]]}},
 +
{{SubtiWiki category|[[transcription factors and their control]]}},
 +
{{SubtiWiki category|[[quorum sensing]]}}
 +
 +
= This gene is a member of the following [[regulons]] =
 +
{{SubtiWiki regulon|[[CodY regulon]]}},
 +
{{SubtiWiki regulon|[[ComA regulon]]}}
  
 
=The gene=
 
=The gene=
Line 49: Line 59:
  
  
= Categories containing this gene/protein =
+
 
{{SubtiWiki category|[[genetic competence]]}},
 
{{SubtiWiki category|[[protein modification]]}},
 
{{SubtiWiki category|[[transcription factors and their control]]}},
 
{{SubtiWiki category|[[quorum sensing]]}}
 
 
=The protein=
 
=The protein=
  

Revision as of 16:43, 8 December 2010

Gene name rapC
Synonyms yclL
Essential no
Product response regulator aspartate phosphatase
Function control of ComA activity
MW, pI 45 kDa, 5.024
Gene length, protein length 1146 bp, 382 aa
Immediate neighbours yclK, phrC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RapC context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

genetic competence, protein modification, transcription factors and their control, quorum sensing

This gene is a member of the following regulons

CodY regulon, ComA regulon

The gene

Basic information

  • Locus tag: BSU03770

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: control of ComA activity PubMed
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: binding of PhrC to RapC prevents it from binding ComA PubMed
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
    • expressed at high cell density (ComA) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References