Difference between revisions of "RapD"
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* '''Operon:''' ''[[rapD]]'' {{PubMed|9636707}} | * '''Operon:''' ''[[rapD]]'' {{PubMed|9636707}} | ||
| − | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|9636707}}, [[SigX]] {{PubMed|9636707}} | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|9636707}}, [[SigM]] {{PubMed|18179421}}, [[SigX]] {{PubMed|9636707}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 112: | Line 112: | ||
** [[RghR]]: transcription repression {{PubMed|17227471}} | ** [[RghR]]: transcription repression {{PubMed|17227471}} | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 16:46, 17 May 2011
- Description: response regulator aspartate phosphatase, controls ComA activity
| Gene name | rapD |
| Synonyms | ywpA |
| Essential | no |
| Product | response regulator aspartate phosphatase |
| Function | control of ComA-dependent gene expression |
| MW, pI | 41 kDa, 7.691 |
| Gene length, protein length | 1062 bp, 354 aa |
| Immediate neighbours | ywpB, flhP |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Contents
Categories containing this gene/protein
genetic competence, protein modification, transcription factors and their control, quorum sensing, cell envelope stress proteins (controlled by SigM, W, X, Y)
This gene is a member of the following regulons
RghR regulon, SigM regulon, SigX regulon
The gene
Basic information
- Locus tag: BSU36380
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Protein family: RAP family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P94583
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Mitsuo Ogura, Yasutaro Fujita
Bacillus subtilis rapD, a direct target of transcription repression by RghR, negatively regulates srfA expression.
FEMS Microbiol Lett: 2007, 268(1);73-80
[PubMed:17227471]
[WorldCat.org]
[DOI]
(P p)
X Huang, J D Helmann
Identification of target promoters for the Bacillus subtilis sigma X factor using a consensus-directed search.
J Mol Biol: 1998, 279(1);165-73
[PubMed:9636707]
[WorldCat.org]
[DOI]
(P p)
