Difference between revisions of "GanA"
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|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''ganA'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yvfN '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yvfN, lacA '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
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|style="background:#ABCDEF;" align="center"|'''Function''' || galactan utilization | |style="background:#ABCDEF;" align="center"|'''Function''' || galactan utilization | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU34130 | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU34130 ganA] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 79 kDa, 5.704 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 79 kDa, 5.704 | ||
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2061 bp, 687 aa | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2061 bp, 687 aa | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ganB]]'', ''[[ganQ]]'' |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15418]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15418]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | ||
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__TOC__ | __TOC__ | ||
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<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
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<br/><br/> | <br/><br/> | ||
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===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * a ''[[cycB]]-[[ganP]]-[[ganQ]]-[[ganA]]-[[ganB]]'' mutant is impaired in the utilization of galactan {{PubMed|22893383}} | ||
=== Database entries === | === Database entries === | ||
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=== Additional information=== | === Additional information=== | ||
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=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
| − | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' |
| + | ** degradation of galactotriose to galactose {{PubMed|22893383}} | ||
* '''Protein family:''' glycosyl hydrolase 42 family (according to Swiss-Prot) | * '''Protein family:''' glycosyl hydrolase 42 family (according to Swiss-Prot) | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[cycB]]-[[ | + | * '''Operon:''' ''[[cycB]]-[[ganP]]-[[ganQ]]-[[ganA]]-[[ganB]]'' {{PubMed|9287030}} |
| − | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ganA_3503020_3505083_-1 | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ganA_3503020_3505083_-1 ganA] {{PubMed|22383849}} |
* '''Sigma factor:''' | * '''Sigma factor:''' | ||
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=References= | =References= | ||
| − | <pubmed>2104611,9287030,17056685 , 22517742</pubmed> | + | <pubmed>2104611,9287030,17056685 , 22517742 22893383</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:53, 16 August 2012
- Description: beta-galactosidase
| Gene name | ganA |
| Synonyms | yvfN, lacA |
| Essential | no |
| Product | beta-galactosidase |
| Function | galactan utilization |
| Gene expression levels in SubtiExpress: ganA | |
| MW, pI | 79 kDa, 5.704 |
| Gene length, protein length | 2061 bp, 687 aa |
| Immediate neighbours | ganB, ganQ |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources, phosphoproteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU34130
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- degradation of galactotriose to galactose PubMed
- Protein family: glycosyl hydrolase 42 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- phosphorylated on Arg-387 PubMed
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O07012
- KEGG entry: [3]
- E.C. number: 3.2.1.23 3
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Additional information:
Biological materials
- Mutant:GP1181 (aphA3) available in the Stülke lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
