Difference between revisions of "PdaC"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotT]]'', ''[[yjfA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotT]]'', ''[[yjfA]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12100 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12100 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yjeA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yjeA_context.gif]]

Revision as of 09:57, 14 May 2013

  • Description: peptidoglycan deacetylase C

Gene name yjeA
Synonyms
Essential no
Product polysaccharide deacetylase C
Function cell wall modification
MW, pI 53 kDa, 9.105
Gene length, protein length 1401 bp, 467 aa
Immediate neighbours cotT, yjfA
Sequences Protein DNA DNA_with_flanks
Genetic context
YjeA context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

cell wall/ other

This gene is a member of the following regulons

WalR regulon

The gene

Basic information

  • Locus tag: BSU12100

Phenotypes of a mutant

  • sensitive to lysozyme treatment PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • deacetylates N-acetylmuramic acid (MurNAc) but not GlcNAc from peptidoglycan PubMed
  • Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
    • K(m)=4.8 mM and k(cat)=0.32 s(-1) (toward B. subtilis peptidoglycan) PubMed
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References