YtrD

• Description: ABC transporter (hydrophobic protein, probably channel protein)
  
  

Gene name	ytrD
Synonyms
Essential	no
Product	ABC transporter (hydrophobic protein, probably channel protein)
Function	unknown
Gene expression levels in SubtiExpress: ytrD
Interactions involving this protein in SubtInteract: YtrD
Metabolic function and regulation of this protein in SubtiPathways: Central C-metabolism
MW, pI	36 kDa, 9.094
Gene length, protein length	975 bp, 325 aa
Immediate neighbours	ytrE, ytrC
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

• Locus tag: BSU30430

Database entries

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: ABC-5 integral membrane protein family (according to Swiss-Prot)

• Paralogous protein(s): YtrC

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:
  • (YtrB-YtrE)-(YtrC-YtrD)-YtrF PubMed

• Localization: cell membrane (according to Swiss-Prot)

Database entries

• Structure:

• UniProt: O34953

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon: ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF PubMed

• Expression browser: ytrD PubMed

• Sigma factor: SigA PubMed

• Regulation:
  • induced by ramoplanin (YtrA) PubMed
  • expressed early in the stationary phase PubMed
  • induced by cold shock (5-fold) PubMed

• Regulatory mechanism:
  • YtrA: transcription repression PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Additional publications: PubMed