YkkC

• Description: similar to molecular chaperone
  
  

Gene name	ykkC
Synonyms
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: ykkC
MW, pI	11 kDa, 5.364
Gene length, protein length	336 bp, 112 aa
Immediate neighbours	ykkB, ykkD
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

chaperones/ protein folding, membrane proteins

The gene

Basic information

• Locus tag: BSU13090

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: View classification (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:
  • cell membrane (according to Swiss-Prot)

Database entries

• Structure:

• UniProt: P49856

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon: ykkC-ykkD PubMed

• Expression browser: ykkC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:
  • expression of the ykkC-ykkD operon may be controlled by the presumptive ykkC/yxkD riboswitch PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Michelle M Meyer, Ming C Hammond, Yasmmyn Salinas, Adam Roth, Narasimhan Sudarsan, Ronald R Breaker
Challenges of ligand identification for riboswitch candidates.
RNA Biol: 2011, 8(1);5-10
[PubMed:21317561] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)

D L Jack, M L Storms, J H Tchieu, I T Paulsen, M H Saier
A broad-specificity multidrug efflux pump requiring a pair of homologous SMR-type proteins.
J Bacteriol: 2000, 182(8);2311-3
[PubMed:10735877] [WorldCat.org] [DOI] (P p)